PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02761.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 357aa    MW: 41101.9 Da    PI: 9.9922
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02761.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57372.86.4e-23111200397
                   DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                              f+++ws+eDei++L+G+i+fk++tg ++ +++ +f+ f+ +s+ ++ +  ql eKirr+++K++k ++   +g+    s+ h+ + 
  Sme2.5_02761.1_g00007.1 111 FSKVWSDEDEISILRGMIKFKEQTGRNAIQNVPEFHAFILQSLTLQPTLIQLREKIRRFREKYEKTSAG--RGN---ASTLHQLQL 191
                              899*************************************************************99988..454...57778889* PP

                   DUF573  89 felskkiWg 97 
                              f+l+ kiW+
  Sme2.5_02761.1_g00007.1 192 FQLCDKIWN 200
                              ********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-21111200IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEDASRMTR KEKSKKRKNK GIEEEKNSIR VLYNDTPSDV YDEEKSPSPK RLRMVENESR  60
MARKEKSKKR KNKGIEEEKN AIRLLYNDTP SDGYDEVKSS SPKRMMKPPP FSKVWSDEDE  120
ISILRGMIKF KEQTGRNAIQ NVPEFHAFIL QSLTLQPTLI QLREKIRRFR EKYEKTSAGR  180
GNASTLHQLQ LFQLCDKIWN RNLSATNIGQ EKPKKQNNIP EIEQHKIPET GQQQHRIIPK  240
SGLDAQALHE LFKRIATDIE LVVNSEACLR GSKKEVELRV IDITVESMKL GIKVGTLLHE  300
KATSPELRNS PQLLEQEALK AYLETKIEHA QLLLNAYNSY IKGHSNEGQS SASAIKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354969.21e-115PREDICTED: uncharacterized protein LOC102600510
TrEMBLA0A0V0HV441e-116A0A0V0HV44_SOLCH; Putative ovule protein (Fragment)
STRINGPGSC0003DMT4000274401e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138051214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-12DNA-binding storekeeper protein-related transcriptional regulator